The manual mode allows you to completely control your team during their turn (thanks to Cipnit). – By pressing start, you can change between automatic and manual mode. – All Pokémon gain experience points, even those that have not been in the dungeon, as in recent PMD games (thanks to irdkwia) – Teammates can now activate traps (thanks to Cipnit). – You don’t have a boring tutorial when you start the first dungeon (thanks to End45). – After the quiz, you can choose if the starter suits you or not, like in the recent PMD games (thanks to irdkwia). – There are many more features, but I let you discover them by playing the game. I recommend you to try it only after finishing the post-game. – The Marowak Dojo will feature 4 very difficult floors and an extremely difficult boss at the end. – Pokémon now have their egg moves as well as their new attacks in their level up moves. – Intimidator IQ Skill now has a 16% chance to activate instead of 32%. – All Pokémon in the game will be recruitable, including Purple Kecleon and Arceus. – In the basic game, pokemons appear every 36 turns. – After graduating from the guild, you will have access to the futures dungeons. – The speed increase and decrease time has been reduced. Speed increasing moves have received a big PP nerf. For example, Surf hits the whole room, Knock Off deals damage, Howl affects all allies, and many other changes and adjustments. – The effect of some attacks has been changed. Dialga will be able to change his form and become Primal Dialga with 360 IQ as well. Giratina will be able to freely change between its two forms when he has 360 IQ. – When a legendary Pokémon has 999 IQ, he can change his form to shiny. The list of Pokemon and their location is further down in the thread. – Some Pokémon will have their shiny forms in the game. – 5 dungeons “The Hell”, all with different characteristics (For example, The Hell North will be the succession of all the bosses with “rest room” between 3 bosses) but an extreme difficulty. – The puzzles in the Aegis Cave will be much easier to do, the stones will take less time to find, for example the Ice Aegis Cave will only have Unown I, C and E.
I won’t spoil everything, but for example, Cranidos gets Rock Head, Ninetales gets Drought, Ponyta and Rapidash get Quick Feet instead of Run Away etc… – Some pokemon abilities have been changed or added.